rs1429441 chr8:111416331 C>T
- Sequence
taagactgagggcccgcagatacg[C/T]tgtcactcatctgcataattcttt
- ASB in cell types
- VCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN PKNX1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.44 | 0.21 | 1.33 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.87 | -4.33 | 1.75 | -0.77 | Weak Concordant | |||
| STAG1_HUMAN | 1.75 | -0.07 | 1.11 | n/a | n/a |
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Motif analysis
