rs1430017 chr2:37833508 C>A
- Sequence
acagtgttgctgggataaaacacg[C/A]tagaagaaatggcggtaagttctt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi)
- ASB for transcription factors
- SRF_HUMAN STAG1_HUMAN IKZF1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | 4.22 | n/a | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 2.55 | -2.16 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.98 | -4.89 | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | 2.19 | -4.14 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 1.54 | 0.04 | 1.17 | n/a | No Hit |
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