rs1432821 chr5:168136580 C>T

Sequence
caccacactccccagctttatcaa[C/T]gggtccaaagttcctttgagaaga
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN 3.21 n/a 1.1·10-61.00 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP asthma,  diabetic retinopathy in type 2 diabetes mellitus,  neuroticism,  paternal transmission distortion,  primary rhegmatogenous retinal detachment,  total cholesterol change with statins,  transmission distortion
GTEx eQTL Stomach

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