rs1433061 chr19:9435630 A>G
- Sequence
tcaaacctggaggagcgctcggga[A/G]ctgcaacctcagccgagctgaaca
- ASB in cell types
- HepG2 (hepatoblastoma) neural progenitors adult erythroblasts
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN GABPA_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.48 | 0.54 | 2.30 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.47 | n/a | 1.00 | n/a | No Hit | |||
| GABPA_HUMAN | 0.98 | 0.01 | 1.48 | n/a | No Hit | |||
| RBBP5_HUMAN | 1.69 | n/a | 2.50 | n/a | n/a | |||
| FOXA3_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood