rs1434079 chr2:26061801 C>G
- Sequence
gacagaatgtcacgctgtcactca[C/G]gctggagtacagtgctacgatttc
- ASB in cell types
- MDA-MB-231ERb(triple negative breast cancer) K562 (myelogenous leukemia)
- ASB for transcription factors
- PKNX1_HUMAN ESR2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 1.01 | n/a | 2.00 | 1.03 | Weak Discordant | |||
| ESR2_HUMAN | -0.68 | 1.44 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, infant head circumference
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid