rs1435064 chr3:191301216 A>G

Sequence
agctttagtgaaactagaaaagaa[A/G]atttgtctcattctagctggtgcc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
SRF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRF_HUMAN 2.82 n/a 1.6·10-31.00 1.00 -1.62 Weak Concordant
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Motif analysis

SRF_HUMAN Weak Concordant
SRF_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  ldl cholesterol change with statins,  refractive error,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Artery_Tibial,  Brain_Amygdala,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Nerve_Tibial,  Thyroid

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