rs1435528 chr7:12210267 C>T

Sequence
acattttaatagtcttgatacata[C/T]tgactgtctgccagaaaacttagg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
RING2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RING2_HUMAN -1.74 3.73 1.002.9·10-5 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hypertension (early onset hypertension),  neuroblastoma (brain cancer),  pulse rate
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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