rs1436121 chr12:95943447 C>T

Sequence
ctggagaacgcgcagcaagtggtg[C/T]tggtgtgcgcccgcggcgagcgct
ASB in cell types
foreskin keratinocyte GBM39 (Human brain tumor) HepG2 (hepatoblastoma)
ASB for transcription factors
CTCFL_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCFL_HUMAN 2.26 0.17 6.9·10-31.00 1.83 n/a No Hit
CTCF_HUMAN 0.84 0.61 7.4·10-30.89 1.36 -1.98 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP cystatin c in serum,  mitral annular calcium,  triglycerides
GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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