rs1437478 chr15:59819243 G>T
- Sequence
gacccctacccctgccacagtgtg[G/T]cagcctgtcactagacttcatctt
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12890 (Lymphoblastoid Cell Lines) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.18 | -0.85 | 1.25 | -2.72 | Concordant | |||
| SPI1_HUMAN | 1.22 | 0.13 | 1.12 | n/a | No Hit |
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Motif analysis
