rs1438063 chr2:177831117 A>G

Sequence
gaaggcaaataatcactatggctc[A/G]cctgctaagtctgctctgttcacc
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.97 -0.33 2.1·10-41.00 2.07 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP diastolic blood pressure (dbp),  height,  total cholesterol change with statins,  triglycerides,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Heart_Left_Ventricle,  Nerve_Tibial,  Prostate

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