rs1438738 chr5:80125630 A>T

Sequence
ctttctacacaggaatgaccttga[A/T]gacttgatttgcattattgaaagc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
VDR_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
VDR_HUMAN -5.01 2.92 1.007.8·10-3 2.00 3.49 Concordant
FOXK2_HUMAN n/a 2.83 1.008.4·10-3 1.50 n/a No Hit
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Motif analysis

VDR_HUMAN Concordant
VDR_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  childhood acute lymphoblastic leukemia
GTEx eQTL Artery_Tibial,  Brain_Hypothalamus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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