rs1439644 chr2:42794609 C>T
- Sequence
attagaagcaaatagaatctaccc[C/T]acgatccaagctcaaaggatctgg
- ASB in cell types
- GM18526 (B – cells Lymphoblastoid Cell Lines) HepG2 (hepatoblastoma) GM02630 (Fanconi anemi)
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM18526 (B – cells Lymphoblastoid Cell Lines) | 2.72 | -3.16 | 1.00 | |||
| HepG2 (hepatoblastoma) | 0.83 | 0.10 | 1.99 | |||
| GM02630 (Fanconi anemi) | 0.93 | -0.52 | 1.00 |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), diastolic blood pressure (dbp), fasting blood glucose, hdl cholesterol change with statins, ldl cholesterol, maternal transmission distortion, schizophrenia, systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid, Whole_Blood