rs1439916 chr1:47709195 C>T

Sequence
ttacagcagcaatcccgggattct[C/T]ggccccggggggtcctgtttacgc
ASB in cell types
neural cell iPS-derived dermal fibroblasts

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
neural cell 1.77 -1.25 0.011.00 1.00
iPS-derived dermal fibroblasts -0.56 1.53 1.000.05 1.00
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  age at death with kuru exposure,  hdl cholesterol,  height,  longstanding arthritis,  rheumatoid arthritis
GTEx eQTL Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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