rs1440099 chr2:42063897 T>C

Sequence
tccctatttgtttccaacattctc[T/C]ccattcccatggtgactcaactcc
ASB in cell types
TTC-1240 (Rhabdoid tumor of the kidney)
ASB for transcription factors
SSXT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSXT_HUMAN 2.47 -4.70 0.041.00 2.00 n/a n/a
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP infant head circumference,  intracranial aneurysm,  microalbuminuria,  urinary albumin-to-creatinine ratio,  variant creutzfeldt-jakob disease
GTEx eQTL Artery_Tibial,  Brain_Cerebellum,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Liver,  Lung,  Testis

Download