rs1441589 chr3:178382426 C>G
- Sequence
aacttatattagatcctaccagta[C/G]tcttcaagataagacaagacacag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN GATA2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.08 | 0.06 | 1.71 | n/a | No Hit | |||
| GATA2_HUMAN | 1.54 | -0.39 | 2.12 | 0.40 | Weak Discordant | |||
| ESR1_HUMAN | 0.88 | -0.10 | 1.70 | n/a | No Hit |
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Motif analysis
