rs1443642 chr18:35123035 G>A
- Sequence
gcagctgtgccctccctccctgcc[G/A]tgagccatgctgagcgcctccagc
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.73 | -0.34 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.16 | 1.39 | 1.21 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Thyroid, Whole_Blood