rs1445154 chr10:48511936 A>T

Sequence
cagcagtccctggccacctccccc[A/T]attagcccccagtctcaacaacag
ASB in cell types
SEM (childhood B acute lymphoblastic leukemia) macrophages form periferal blood
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.34 0.03 6.5·10-31.00 2.46 1.81 Weak Discordant
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Motif analysis

SPI1_HUMAN Weak Discordant
SPI1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis

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