rs144654804 chr1:108963213 G>T
- Sequence
cccggggcacccacaggccgcagc[G/T]gacgcacgcagctagcacggtccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- RFOX2_HUMAN COT1_HUMAN HNRLL_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 1.71 | -1.07 | 1.00 | n/a | n/a | |||
| COT1_HUMAN | -1.39 | 1.39 | 1.00 | n/a | No Hit | |||
| HNRLL_HUMAN | -0.75 | 2.00 | 1.25 | n/a | n/a | |||
| IKZF2_HUMAN | -0.46 | 1.76 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.46 | -0.04 | 1.75 | n/a | No Hit |
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