rs1449453 chr3:146019695 A>G
- Sequence
tcatctacattcctgtggctgtcc[A/G]aaactaatattatttttccctgat
- ASB in cell types
- 22RV1 (prostate carcinoma) KerCT (keratenocytes) VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.78 | -4.93 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.80 | -0.69 | 1.70 | n/a | No Hit | |||
| FOXA2_HUMAN | 2.54 | -2.58 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP barnes akathisia rating scale, bipolar disorder in alcoholics, hdl cholesterol change with statins, height, lp-pla2 activity, lp-pla2 mass
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid