rs1451385 chr7:25855101 T>C
- Sequence
agacgtctgtgcaatatccaccac[T/C]gaacacgtgaggtcgtactcaagt
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) neural cell GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- USF2_HUMAN RAD51_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF2_HUMAN | 2.77 | n/a | 1.50 | -0.51 | Weak Concordant | |||
| RAD51_HUMAN | 2.65 | -2.51 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 0.87 | 0.82 | 1.28 | n/a | No Hit |
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Motif analysis
