rs1451509 chr17:59365772 C>T

Sequence
gagctttagctgtttccctcctct[C/T]cctggcttattgctggtggctgga
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) primary B-CLL cells
ASB for transcription factors
IKZF1_HUMAN SOX13_HUMAN BRD4_HUMAN NR2F6_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN n/a 1.99 1.001.4·10-4 1.83 n/a n/a
SOX13_HUMAN -5.41 3.23 1.002.4·10-3 2.00 n/a No Hit
BRD4_HUMAN 2.46 0.39 0.020.80 1.80 n/a n/a
NR2F6_HUMAN 0.11 2.18 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hip bone mineral density (bmd),  rheumatoid arthritis,  schizophrenia,  serum creatinine,  years of education
GTEx eQTL Heart_Left_Ventricle,  Whole_Blood

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