rs1451762 chr3:160413788 G>C
- Sequence
tgcatccagttccttgttacagat[G/C]aaattccctactctgaagtcttag
- ASB in cell types
- 22RV1 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.71 | 0.94 | 1.42 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.45 | 0.89 | 2.30 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, infant head circumference, ldl cholesterol, lymphocyte count, maternal transmission distortion, total cholesterol, transmission distortion, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood