rs1452924 chr2:29161322 C>T

Sequence
atgattataattttaaacagaagt[C/T]ggttgaacaaaaccaagtttgtat
ASB in cell types
GM12891 (male B- cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma)
ASB for transcription factors
STAG1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 2.38 -0.40 8.9·10-30.96 1.17 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale,  neuroticism
GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia,  Nerve_Tibial

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