rs1453415 chr11:5807789 G>A
- Sequence
gtgggggcgcactagaggctgcac[G/A]acaacgacaacatgttgaggcaga
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.49 | 0.72 | 1.24 | -0.60 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP arthritis including non-rheumatoid, coronary artery disease (cad), infant head circumference, primary rhegmatogenous retinal detachment, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Lung, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen