rs1454535 chr2:220365201 A>G
- Sequence
tgtctctgcttcaagtcctggcaa[A/G]cattttctctccaagttaccatga
- ASB in cell types
- MCF10A (breast epithelial cells) foreskin keratinocyte keratinocytes HMLE-Twist-ER (breast cancer)
- ASB for transcription factors
- P63_HUMAN CTCF_HUMAN SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P63_HUMAN | -0.37 | 2.11 | 2.20 | 4.70 | Concordant | |||
| CTCF_HUMAN | n/a | 2.58 | 2.00 | n/a | No Hit | |||
| SMAD3_HUMAN | -2.39 | 2.73 | 1.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GRASP asthma, maternal transmission distortion, partial epilepsy, transmission distortion, urinary albumin-to-creatinine ratio