rs1455653 chr2:197613596 G>A

Sequence
acatcattgaccatgattactatc[G/A]ttgtgtgtactgaagcagctaaga
ASB in cell types
HepG2 (hepatoblastoma) breast tumor primary prostate cancer
ASB for transcription factors
ESR1_HUMAN CREB1_HUMAN JUND_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.89 2.69 0.442.1·10-4 2.33 n/a No Hit
CREB1_HUMAN 1.39 -0.41 1.9·10-31.00 2.00 n/a No Hit
JUND_HUMAN 2.42 -4.65 0.051.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  infant head circumference,  irritible bowel syndrome,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Whole_Blood

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