rs1456333 chr18:650490 T>C
- Sequence
atcttcagaacctttttatcttcc[T/C]aaactgaaactctgtactcgttaa
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- ELF1_HUMAN SPI1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -0.41 | 2.67 | 1.00 | n/a | No Hit | |||
| SPI1_HUMAN | 0.65 | 0.67 | 1.35 | 0.65 | Weak Discordant | |||
| SMCA4_HUMAN | -0.18 | 0.90 | 1.00 | n/a | n/a |
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Motif analysis
