rs1458290 chr4:169009812 G>A
- Sequence
cgagacgcattctacccttggaac[G/A]ggagagcgcctgcacgcggctaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts gastroesophageal sphincter 22RV1 (prostate carcinoma)
- ASB for transcription factors
- RBBP5_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 3.47 | n/a | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.80 | -4.28 | 2.50 | 2.28 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood