rs1459772 chr10:46228732 T>C
- Sequence
gccattctccctctctccatgggg[T/C]ggcggcattaccacattggagaac
- ASB in cell types
- K562 (myelogenous leukemia) stem and progenitor cells gastroesophageal sphincter foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN REST_HUMAN MTA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.44 | 0.85 | 1.64 | -0.87 | Weak Concordant | |||
| RAD21_HUMAN | 1.94 | -3.08 | 1.50 | n/a | n/a | |||
| REST_HUMAN | 1.13 | n/a | 1.50 | 2.28 | Discordant | |||
| MTA3_HUMAN | 2.70 | -2.57 | 1.00 | n/a | n/a |
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Motif analysis
