rs1459950 chr11:81869959 C>T
- Sequence
gtaaaagaacagaagggaaaatcc[C/T]caaattcatgcaaatgcagaaacc
- ASB in cell types
- CD4+ T cells from blood GM12878 (female B-cells lymphoblastoid cell line) SU-DHL-10 (diffuse large B-cell lymphoma) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- NFKB1_HUMAN RUNX3_HUMAN MEF2B_HUMAN NFKB2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFKB1_HUMAN | 3.48 | -3.17 | 1.00 | -4.89 | Concordant | |||
| RUNX3_HUMAN | 3.07 | -2.94 | 1.00 | 0.26 | Weak Discordant | |||
| MEF2B_HUMAN | 1.83 | 1.36 | 1.75 | n/a | No Hit | |||
| NFKB2_HUMAN | 2.67 | -4.67 | 1.50 | -3.87 | Concordant | |||
| FOXP1_HUMAN | 2.00 | -3.73 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
