rs1468102 chr11:2983296 C>G
- Sequence
ccttcccatggaatggtacctgtt[C/G]caacttaacagagtccattgataa
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- SCRT2_HUMAN SCRT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SCRT2_HUMAN | -2.37 | 2.67 | 1.00 | 3.48 | Concordant | |||
| SCRT1_HUMAN | -2.99 | 3.23 | 1.00 | 3.98 | Concordant |
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Motif analysis
Genetic associations
GRASP adiponectin levels, aortic valve calcium, hdl cholesterol, serum creatinine, triglycerides, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood