rs147899431 chr6:116571518 G>C

Sequence
gccgcccgctctcccggcgcggca[G/C]ctgtctgggctgctgcgcgccgcc
ASB in cell types
HepG2 (hepatoblastoma) foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN FOXK2_HUMAN NFYC_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.10 0.75 1.5·10-30.38 1.70 n/a No Hit
FOXK2_HUMAN 2.93 1.45 3.4·10-30.54 1.75 n/a No Hit
NFYC_HUMAN n/a 2.18 1.000.01 2.00 n/a No Hit
TYY1_HUMAN 2.08 n/a 0.021.00 2.00 n/a No Hit
THA11_HUMAN n/a 2.16 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI red cell distribution width
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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