rs148057940 chr17:43316040 G>T
- Sequence
gttgagggggtttttggagaaaac[G/T]gtggggttgggaggttgtagtact
- ASB in cell types
- CD14+ monocytes Th2-cells
- ASB for transcription factors
- STAT1_HUMAN MAF_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.50 | n/a | 3.00 | -0.88 | Weak Concordant | |||
| MAF_HUMAN | 3.26 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.08 | 0.60 | 1.07 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood