rs148471044 chr13:31200594 C>T
- Sequence
gccttccgcccgcgctccgccgtc[C/T]tgcgcgccccgcgccgggcgggag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GBM39 (Human brain tumor)
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.56 | 0.91 | 1.35 | 0.22 | Weak Concordant | |||
| TYY1_HUMAN | -0.36 | 2.42 | 2.00 | 3.00 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Thyroid