rs148485960 chr21:37366156 G>A
- Sequence
gtcgcggccgccgcgcttcccggg[G/A]agagaggcgagcgcggcgcccgga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SKIL_HUMAN MNT_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SKIL_HUMAN | -2.41 | 2.65 | 1.00 | n/a | n/a | |||
| MNT_HUMAN | -1.44 | 1.73 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.20 | -1.88 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic