rs149006168 chr9:128181674 G>C
- Sequence
ggtctagcggtgacgccagcgtct[G/C]ggaagacgcccgttaccaggcgga
- ASB in cell types
- glioblastoma cells TTC-1240 (Rhabdoid tumor of the kidney) SYO-1(Biphasic synovial sarcoma) renal cortex
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.06 | 0.22 | 1.26 | -3.40 | Concordant | |||
| CREB1_HUMAN | 2.76 | -2.45 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic