rs149088603 chr3:69013777 G>C
- Sequence
ctcgggccccgcagaggcaggacc[G/C]ggactacacccaggagggccaggg
- ASB in cell types
- foreskin keratinocyte upper lobe of left lung Peyer's patch ovary
- ASB for transcription factors
- CTCF_HUMAN KMT2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.11 | 0.45 | 1.21 | -0.05 | Weak Concordant | |||
| KMT2A_HUMAN | 1.19 | -0.35 | 1.00 | -0.69 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Coronary, Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage