rs149172009 chr20:52191987 G>T
- Sequence
gtggcgagggatgcgcccctgccc[G/T]cactctgcgttctccgcggacgcg
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) breast tumor
- ASB for transcription factors
- RFOX2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | -1.11 | 2.38 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung