rs149647374 chr7:106309547 A>T
- Sequence
tgtcagtacactgacaccatgagg[A/T]agaaagtgagacagtgctttaaat
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -2.64 | 2.60 | 1.17 | 0.63 | Weak Concordant | |||
| STAG1_HUMAN | -1.90 | 2.22 | 1.17 | n/a | n/a |
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Motif analysis
