rs150199985 chr1:145281319 T>C

Sequence
cgaatagtaggtgagccgtaagtg[T/C]ttttgtaattcagggtgcgggctc
ASB in cell types
HeLa (cervical adenocarcinoma) primary B-CLL cells
ASB for transcription factors
INT11_HUMAN BRD4_HUMAN PCF11_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
INT11_HUMAN 1.55 -0.03 1.0·10-21.00 2.00 n/a n/a
BRD4_HUMAN 2.71 -1.91 0.011.00 2.00 n/a n/a
PCF11_HUMAN 1.39 -3.71 0.021.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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