rs151345 chr20:59011794 G>C

Sequence
attccaggaactgagggttccccc[G/C]ctttgtagaccatacagggtaact
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
VEZF1_HUMAN E4F1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
VEZF1_HUMAN -1.31 2.54 1.001.2·10-3 2.00 0.34 Weak Concordant
E4F1_HUMAN n/a 1.93 1.000.03 2.00 n/a No Hit
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Motif analysis

VEZF1_HUMAN Weak Concordant
VEZF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Tibial Cells_Cultured_fibroblasts Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Pituitary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Stomach Thyroid Whole_Blood

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