rs151949 chr5:96808142 C>T
- Sequence
cggggaagctgcgaggttgcgatg[C/T]gggggatcaggcgtaggaagtgca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PKNX1_HUMAN CTCF_HUMAN NFRKB_HUMAN COT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 1.05 | 3.18 | 1.75 | n/a | No Hit | |||
| CTCF_HUMAN | 0.81 | 0.84 | 1.11 | n/a | No Hit | |||
| NFRKB_HUMAN | -0.17 | 3.14 | 2.00 | n/a | n/a | |||
| COT1_HUMAN | -1.14 | 1.80 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood