rs152287 chr5:94855654 G>A

Sequence
atactaacagcctgctgcagcccc[G/A]gaacaaagccagaaagacattatt
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
ATF2_HUMAN ATF7_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN -2.55 2.90 1.001.5·10-6 1.00 n/a No Hit
ATF7_HUMAN -2.24 2.67 1.005.7·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  hdl cholesterol,  parkinsons disease,  refractive error
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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