rs155931 chr16:21300837 C>T
- Sequence
aagctgcgattctaaacaggaagc[C/T]acactggatgcgagaattggggtg
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SPI1_HUMAN CDK8_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.91 | 0.48 | 1.64 | 0.43 | Weak Discordant | |||
| CDK8_HUMAN | 1.59 | -0.62 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.17 | -0.27 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), ldl cholesterol, simpson-angus scale
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid