rs15656 chr2:70293714 C>T
- Sequence
cgcacggctttcctcacgctcccg[C/T]tgtaggcccggcgtcttgcgtctg
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes 22RV1 (prostate carcinoma) thymus-derived CD34- cells
- ASB for transcription factors
- STAT1_HUMAN RFOX2_HUMAN ANDR_HUMAN NELFA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.23 | 0.10 | 3.00 | n/a | No Hit | |||
| RFOX2_HUMAN | -3.66 | 1.52 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.82 | n/a | 2.00 | n/a | No Hit | |||
| NELFA_HUMAN | -2.69 | 0.88 | 1.50 | n/a | n/a | |||
| NFIC_HUMAN | n/a | 1.23 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood