rs15679 chr6:116244562 C>A

Sequence
ttggtctgggtaaatatggctgag[C/A]gttgttatcttttgttatctttta
ASB in cell types
VCaP (prostate carcinoma) HEK293 (embryonic kidney)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
VCaP (prostate carcinoma) 1.09 0.18 3.7·10-51.00 2.00
HEK293 (embryonic kidney) 2.85 n/a 1.7·10-31.00 3.00
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  height,  homa-ir,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid

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