rs156901 chr1:16513967 C>T
- Sequence
caaagccgatacggctgatgctcg[C/T]tttttctcctatgacatgcaggcg
- ASB in cell types
- HL-60 (acute myeloid leukemia) hTERT-HME1(Telomerase immortalized cell line) TTC-1240 (Rhabdoid tumor of the kidney) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- BRCA2_HUMAN KDM6A_HUMAN INT11_HUMAN SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRCA2_HUMAN | 2.74 | -3.01 | 1.00 | n/a | n/a | |||
| KDM6A_HUMAN | 2.14 | n/a | 2.00 | n/a | n/a | |||
| INT11_HUMAN | 1.91 | n/a | 2.00 | n/a | n/a | |||
| SMAD3_HUMAN | 2.25 | -3.60 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.27 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Whole_Blood