rs15905 chr8:124998563 G>C
- Sequence
gcgacggttactctggttactggg[G/C]ccgcgccgcgctggcgagagccgc
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) 22RV1 (prostate carcinoma) CD14+ monocytes adult erythroblasts
- ASB for transcription factors
- TCF21_HUMAN ANDR_HUMAN STAT1_HUMAN RBBP5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.87 | -5.32 | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | 2.94 | -5.17 | 2.00 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.22 | n/a | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Spleen