rs161430 chr16:2268326 C>G
- Sequence
ttactggagcgggcacatgggtag[C/G]ctgttgaacctgggagggcagcgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) primary B-CLL cells
- ASB for transcription factors
- BRD4_HUMAN ANDR_HUMAN RBM25_HUMAN ENL_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.74 | -0.12 | 1.38 | n/a | n/a | |||
| ANDR_HUMAN | 2.36 | n/a | 3.00 | n/a | No Hit | |||
| RBM25_HUMAN | 1.94 | -0.97 | 2.00 | n/a | n/a | |||
| ENL_HUMAN | -0.77 | 1.88 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood