rs165056 chr16:66660940 G>A

Sequence
tgtctccggaatcgcgtctagctg[G/A]ctccctgctctatccctcccgaac
ASB in cell types
pancreas SW1990 (Pancreatic adenocarcinoma)
ASB for transcription factors
BACH1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BACH1_HUMAN 2.46 n/a 0.011.00 2.00 3.69 Discordant
CTCF_HUMAN 1.07 0.29 0.041.00 1.35 n/a No Hit
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Motif analysis

BACH1_HUMAN Discordant
BACH1_HUMAN pic

Genetic associations

GRASP age at death with kuru exposure,  diastolic blood pressure (dbp),  partial epilepsy,  sporadic creutzfeldt-jakob disease,  total cholesterol,  triglycerides
GTEx eQTL Artery_Tibial,  Brain_Cortex,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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